KEY TO TAXA

KEY TO TAXA

See item #

1.

Genomes of DNA

2

Genomes of RNA

81

2.

Virion DNA does not encode a reverse transcriptase

3

Virion DNA encodes a reverse transcriptase

76

3.

DNA double-stranded

4

DNA single-stranded

60

The dsDNA Viruses

4.

Hosts prokaryotes

5

Hosts eukaryotes

26

5.

Virions have tails

(order Caudovirales)

6

Virions do not have tails

20

6.

Tails contractile

(Myoviridae)

7

Tails not contractile

12

7.

Hosts in the domain Archaea

Myoviridae / H-like viruses”

Hosts in the domain Bacteria

8

8.

Genomes > 50  bp

9

Genomes < 50  kbp

11

9.

Phage temperate

Myoviridae / “P1-like viruses”

Phage virulent

10

10.

DNA circularly permutated; hosts gram-negative bacteria

Myoviridae / “T4-like viruses”

DNA not circularly permutated; hosts gram-positive bacteria

Myoviridae / “SP01-like viruses”

11.

Replication does not involve integration; heads contain circular DNA

Myoviridae / “P2-like viruses”

Replication requires integration; heads contain linear DNA

Myoviridae / “Mu-like viruses”

12.

Tails long (65-600  nm)

(Siphoviridae)

13

Tails short (10-20  nm)

(Podoviridae)

18

13.

Hosts in the domain Archaea

Siphoviridae / M1-like viruses”

Hosts in the domain Bacteria

14

14.

Phage temperate

15

Phage virulent

16

15.

Hosts enterobacteria

Siphoviridae / -like viruses”

Hosts mycobacteria

Siphoviridae / “L5-like viruses”

16.

Genomes about 120  kbp; DNA contains no pac or cos sites

Siphoviridae / “T5-like viruses”

Genomes < 60  kbp; DNA contains pac or cos sites

17

17.

Genomes circularly permutated; DNA about 49  kbp, contains pac sites

Siphoviridae / “T1-like viruses”

Genomes unique; DNA contains cos sites

Siphoviridae / “c2-like viruses”

18.

Genomes about 19  kbp, encode a type B DNA polymerase

Podoviridae / 29-like viruses”

Genomes > 30  kbp

19

19.

Phage virulent

Podoviridae / “T7-like viruses”

Phage temperate

Podoviridae / “P22-like viruses”

20.

Hosts in the domain Bacteria

21

Hosts in the domain Archaea

23

21.

Virions do not contain lipid

Tectiviridae / Tectivirus

Virions contain lipid

22

22.

Virions pleomorphic; nucleocapsids have a lipid-containing envelope

Plasmaviridae / Plasmavirus

Virions isometric; nucleocapsids are bound by a lipid bilayer and an outer isometric shell

Corticoviridae / Corticovirus

23.

Virions rod-shaped

24

Virions not rod-shaped

25

24.

Virions have an envelope

Lipothrixviridae / Lipothrixvirus

Virions do not have an envelope

Rudiviridae / Rudivirus

25.

Virions lemon-shaped

Fuselloviridae / Fusellovirus

Virions droplet-shaped

“SNDV-like viruses”

26.

Virions contain one or more fusiform or cylindrical nucleocapsids and multiple DNA molecules

(Polydnaviridae)

27

Virions contain a single DNA molecule

28

27.

Nucleocapsids 85 330  nm with 2 envelopes

Polydnaviridae / Ichnovirus

Nucleocapsids 40  nm diameter cylinder with 1 envelope

Polydnaviridae / Bracovirus

28.

DNA 90  kbp or greater

29

DNA < 90  kbp

56

29.

DNA > 300  kbp; hosts algae; virions lack envelopes

(Phycodnaviridae)

30

DNA usually < 300  kbp; hosts animals; virions have envelopes

31

30.

Hosts endosymbiotic algae in the genus Chlorella

Phycodnaviridae / Chlorovirus

Hosts Micromonas pusilla

Phycodnaviridae / Prasinovirus

Hosts Chysochromulina spp.

Phycodnaviridae / Prymnesiovirus

Hosts brown algae

Phycodnaviridae / Phaeovirus

31.

Genomes are covalently closed circular DNA molecules; nucleocapsids rod-shaped

(Baculoviridae)

32

Genomes are single linear DNA molecules; nucleocapsids not rod-shaped

33

32.

Inclusions typically contain numerous virions

Baculoviridae / Nucleopolyhedrovirus

Inclusions typically contain a single virion

Baculoviridae / Granulovirus

33.

Virions ovoid/brick-shaped

(Poxviridae)

34

Virions not ovoid or brick-shaped

44

34.

Hosts vertebrates

(Chordopoxvirinae)

35

Hosts invertebrates

(Entomopoxvirinae)

42

35.

Particles ovoid; hosts ungulates

Poxviridae / Chordopoxvirinae / Parapoxvirus

Particles brick-shaped

36

36.

Largest particle dimension > 320  nm; DNA > 250  kbp; host a bird

Poxviridae / Chordopoxvirinae / Avipoxvirus

Largest particle dimension < 320  nm; DNA < 250  kbp

37

37.

Largest particle dimension > 290  nm

Poxviridae / Chordopoxvirinae / Orthopoxvirus

Largest particle dimension < 290  nm

38

38.

DNA > 170  kbp

39

DNA < 170  kbp

40

39.

DNA 175  kbp; largest particle dimension 300  nm

Poxviridae / Chordopoxvirinae / Suipoxvirus

DNA 188  kbp; largest particle dimension 320  nm

Poxviridae / Chordopoxvirinae / Molluscipoxvirus

40.

Particle dimensions 300 270 200  nm; DNA 145  kbp

Poxviridae / Chordopoxvirinae / Capripoxvirus

Particle dimensions 300 250 200  nm

41

41.

DNA 160  kbp, GC content c. 40%

Poxviridae / Chordopoxvirinae / Leporipoxvirus

DNA 146  kbp, GC content c. 33%

Poxviridae / Chordopoxvirinae / Yatapoxvirus

42.

Hosts coleopterans; virions 450 250  nm

Poxviridae / Entomopoxvirinae / Entomopoxvirus A

Hosts not coleopterans; virions < 400  nm long

43

43.

Virions ovoid; DNA < 230  kbp; hosts in Lepidoptera or Orthoptera

Poxviridae / Entomopoxvirinae / Entomopoxvirus B

Virions brick-shaped; DNA > 240  kbp; hosts in Diptera

Poxviridae / Entomopoxvirinae / Entomopoxvirus C

44.

Virions bacilliform, allantoid or ovoid, contained in a sac-like vesicles in insect hosts

Ascoviridae / Ascovirus

Virions approximately isometric

45

45.

Virion DNA circularly permutated; hosts are poikilothermic animals

(Iridoviridae)

46

Virion DNA not circularly permutated; hosts include homoiothermic animals

49

46.

Hosts invertebrates

47

Hosts vertebrates

48

47.

Virions 120  nm in diameter

Iridoviridae / Iridovirus

Virions 180  nm in diameter

Iridoviridae / Chloriridovirus

48.

Hosts amphibians

Iridoviridae / Ranavirus

Hosts fish; virions 200-300  nm in diameter

Iridoviridae / Lymphocystivirus

49.

Virions icosahedral with 70-100  nm diameter cores; multiplies in ticks and swine

Asfarviridae / Asfivirus

Virions quasi-spherical with 100-110  nm diameter cores; multiplies only in vertebrates

(Herpesviridae)

50

50.

DNA contains sequences characteristic of Human herpesvirus 5; disease generally inapparent; growth cycle in vitro lengthy

(Betaherpesvirinae)

51

DNA does not contain sequences characteristic of human CMV; disease generally apparent; growth cycle in vitro generally short

53

DNA sequence, and those of encoded proteins, only distantly related to those of other herpesviruses

Herpesviridae / “Ictalurid herpes-like viruses”

51.

Genome > 200  kbp

52

Genome < 200  kbp

Herpesviridae / Betaherpesvirinae / Roseolovirus

52.

Genome lineage that of Human herpesvirus 5

Herpesviridae / Betaherpesvirinae / Cytomegalovirus

Genome lineage that of Murid herpesvirus 1

Herpesviridae / Betaherpesvirinae / Muromegalovirus

53.

DNA contains sequences characteristic of Human herpesvirus 1; infection often induces epithelial lesions

(Alphaherpesvirinae)

54

DNA contains sequences characteristic of Human herpesvirus 4; infection usually latent in lymphocytes and may cause lymphoproliferative disease

(Gammaherpesvirinae)

55

54.

Genome lineage that of Human herpesvirus 1

Herpesviridae / Alphaherpesvirinae / Simplexvirus

Genome lineage that of Human herpesvirus 3

Herpesviridae / Alphaherpesvirinae / Varicellovirus

Genome lineage that of Gallid herpesvirus 2; hosts birds

Herpesviridae / Alphaherpesvirinae / “Marek’s disease-like viruses”

Genome lineage that of Gallid herpesvirus 1

Herpesviridae / Alphaherpesvirinae / “ILTV-like viruses”

55.

Genome contains an EBNA gene or a homologue; hosts primates

Herpesviridae / Gammaherpesvirinae / Lymphocryptovirus

Genome lacks an EBNA gene or a homologue; hosts a variety of mammals

Herpesviridae / Gammaherpesvirinae / Rhadinovirus

56.

DNA > 30  kbp

57

DNA < 30  kbp

59

57.

Hosts vertebrates

(Adenoviridae)

58

Hosts fungi

Rhizidiovirus

58.

Hosts mammals

Adenoviridae / Mastadenovirus

Hosts birds

Adenoviridae / Aviadenovirus

59.

Virions 45  nm in diameter; DNA c. 5  kb encodes proteins on both strands

Polyomaviridae / Polyomavirus

Virions about 55  nm in diameter; DNA c. 8  kb encodes protein on one strand only

Papillomaviridae / Papillomavirus

The ssDNA Viruses

60.

Hosts prokaryotic

61

Hosts eukaryotic

66

61.

Virions rod-shaped or filamentous

(Inoviridae)

62

Virions isometric

(Microviridae)

63

62.

Hosts enterobacteria

Inoviridae / Inovirus

Hosts mycoplasmas

Inoviridae / Plectrovirus

63.

Hosts purple bacteria (proteobacteria)

64

Hosts not purple bacteria

65

64.

Hosts delta-purple bacteria (proteobacteria)

Microviridae / Microvirus

Hosts epsilon-purple bacteria (proteobacteria)

Microviridae / Bdellomicrovirus

65.

Hosts mycoplasmas

Microviridae / Spiromicrovirus

Hosts Chlamydia

Microviridae / Chlamydiamicrovirus

66.

Hosts plants

67

Hosts not plants

70

67.

Virions geminate; genome in 1 or 2 segments

(Geminiviridae)

68

Virions isometric; genome multipartite

Nanovirus

68.

Vector a whitefly; genomes mostly in 2 parts

Geminiviridae / Begomovirus

Vector not a whitefly; genomes in one piece

69

69.

Genomes contain 7 ORFs; hosts dicotyledonous plants

Geminiviridae / Curtovirus

Genomes contain 4 ORFs; hosts mostly graminaceous plants

Geminiviridae / Mastrevirus

70.

DNA circular

Circoviridae / Circovirus

DNA linear

(Parvoviridae)

71

71.

Hosts vetebrates

(Parvovirinae)

72

Hosts invertebrates

(Densovirinae)

74

72.

A helper virus (an adenovirus or a herpesvirus) needed for productive multiplication

Parvoviridae / Parvovirinae / Dependovirus

Virus multiplies autonomously

73

73.

DNA contains 2 mRNA promoters and forms terminal hairpin structures

Parvoviridae / Parvovirinae / Parvovirus

DNA contains 1 mRNA promoter and has inverted terminal repeats

Parvoviridae / Parvovirinae / Erythrovirus

74.

DNA 6  kb; structural and non-structural proteins encoded on different strands

Parvoviridae / Densovirinae / Densovirus

DNA < 6  kb; proteins encoded on one strand

75

75.

DNA 5  kb; virions contain similar amounts of each polarity DNA

Parvoviridae / Densovirinae / Iteravirus

DNA 4  kb; virions contain mainly negative polarity DNA

Parvoviridae / Densovirinae / Brevidensovirus

The DNA and RNA Reverse Transcribing Viruses

76.

DNA < 5  kbp; hosts vertebrates

(Hepadnaviridae)

77

DNA > 7  kbp; hosts plants

(Caulimoviridae)

78

77.

Virions < 45  nm in diameter; nucleoprotein c. 27  nm in diameter; hosts mammals

Hepadnaviridae / Orthohepadnavirus

Virions > 45  nm in diameter; nucleoprotein c. 35  nm in diameter; hosts birds

Hepadnaviridae / Avihepadnavirus

78.

Virions isometric

79

Virions bacilliform

80

79.

Genomes contains 7 ORFs; hosts brassicaceous plants

Caulimoviridae / Caulimovirus

Genomes contain 8 ORFs; hosts leguminous plants

Caulimoviridae / “SbCMV-like viruses”

Genomes contain 5 ORFs

Caulimoviridae / “CsVMV-like viruses”

Genomes contain 2 ORFs

Caulimoviridae / “PVCV-like viruses”

80.

Genomes contain 3 ORFs

Caulimoviridae / Badnavirus

Genomes contain 4 ORFs

Caulimoviridae / “RTBV-like viruses”

81.

Genomes encode reverse transcriptase which synthesises DNA copies; virus genomes integrate in host genome

82

Genomes do not encode reverse transcriptase; virus genomes do not integrate

92

82.

Integrase gene is located between protease and reverse transcriptase genes

(Pseudoviridae)

83

Integrase is downstream of the reverse transcriptase gene

84

83.

Minus-strand DNA synthesis primed by a complete tRNA molecule

Pseudoviridae / Pseudovirus

Minus-strand DNA synthesis primed by a half-tRNA molecule

Pseudoviridae / Hemivirus

84.

Reverse transcriptase only distantly related to those of retroviruses in phylogenetic comparisons

(Metaviridae)

85

Reverse transcriptase resembles those of retroviruses in phylogenetic comparisons

(Retroviridae)

86

85.

Genomes contain 1 or 2 ORFs; genomes < 6kb

Metaviridae / Metavirus

Genomes contain 3 ORFs; genomes > 6kb

Metaviridae / Errantivirus

86.

Genomes encode only gag, pol, pro and env genes

87

Genomes encode extra proteins in extra ORFs

88

87.

Genomes < 8kb

Retroviridae / Alpharetrovirus

Genomes > 8kb

Retroviridae / Gammaretrovirus

88.

Genome RNA 10kb or less

89

Genome RNA > 10kb

91

89.

Virions assemble at the cell membrane

90

Virions assemble as intracytoplasmic particles with B- or D-type morphology

Retroviridae / Betaretrovirus

90.

Genomes < 9kb; virion morphology C-type

Retroviridae / Deltaretrovirus

Genomes > 9kb; virions contain a bar-shaped or concentric core

Retroviridae / Lentivirus

91.

Virions assemble at the cell membrane; hosts fish

Retroviridae / Epsilonretrovirus

Virions assemble as intracytoplasmic particles; hosts mammals

Retroviridae / Spumavirus

The dsRNA Viruses

92.

RNA double-stranded

93

RNA single-stranded

114

93.

Hosts prokaryotic

Cystoviridae / Cystovirus

Hosts eukaryotic

94

94.

Virions contain > 9 RNA segments

(Reoviridae)

95

Virions contain < 9 RNA segments

103

95.

Hosts animals

96

Hosts plants

101

96.

Genomes in 10 segments

97

Genomes in > 10 segments

99

97.

Virions comprise cores and outer capsid and are > 70  nm in diameter

98

Virions lack an outer capsid and are < 70  nm in diameter

Reoviridae / Cypovirus

98.

Virions sediment at > 600  S, infectivity unaffected at pH 3

Reoviridae / Orthoreovirus

Virions sediment at < 600  S, infectivity lost at pH 3

Reoviridae / Orbivirus

99.

Genome in 11 segments

100

Genome in 12 segments; primary host an ixodid tick

Reoviridae / Coltivirus

100.

Virions appear wheel-like and contain 2 RNA species of < 2kbp; hosts mammals or birds

Reoviridae / Rotavirus

Virions not wheel-like and contain 5 RNA species of < 2kbp; hosts fish or shellfish

Reoviridae / Aquareovirus

101.

Genomes in 10 segments; particles with spikes

102

Genomes in 12 segments; particles without spikes

Reoviridae / Phytoreovirus

102.

Virions with an outer capsid, 65-70  nm in diameter

Reoviridae / Fijivirus

Virions lack an outer capsid, 57-65  nm in diameter

Reoviridae / Oryzavirus

103.

Hosts animals

(Birnaviridae)

104

Hosts not animals

106

104.

Hosts vertebrates

105

Hosts invertebrates

Birnaviridae / Entomobirnavirus

105.

Hosts aquatic animals, usually fish

Birnaviridae / Aquabirnavirus

Hosts birds

Birnaviridae / Avibirnavirus

106.

No virions are formed in diseased tissue

Hypoviridae / Hypovirus

RNA is encapsidated in virions

107

107.

Virions rod-shaped; hosts plants

Varicosavirus

Virions isometric

108

108.

RNA in 1 segment

(Totiviridae)

109

RNA in > 1 segment

(Partitiviridae)

111

109.

Virions 40-43  nm in diameter; hosts fungi

Totiviridae / Totivirus

Virions < 40  nm in diameter; hosts protozoa

110

110.

RNA > 6  kbp; hosts Giardia spp.

Totiviridae / Giardiavirus

RNA < 6  kbp; hosts Leishmania spp.

Totiviridae / Leishmaniavirus

111.

Hosts fungi

112

Hosts not fungi

113

112.

Virions 30-35  nm in diameter, RNA in 2 pieces

Partitiviridae / Partitivirus

Virions 35-40  nm in diameter, RNA in 3-4 pieces

Partitiviridae / Chrysovirus

113.

Virions 30  nm in diameter

Partitiviridae / Alphacryptovirus

Virions 38  nm in diameter

Partitiviridae / Betacryptovirus

114.

RNA negative sense or ambisense

115

RNA positive sense

141

The Negative and Ambisense ssRNA Viruses

115.

Genomes in 1 segment

116

Genomes in > 1 segment

130

116.

RNA linear

(orderMononegavirales)

117

RNA circular; multiplication usually helper-dependent

Deltavirus

117.

RNA > 15  kb

118

RNA < 15  kb

124

118.

Virions filamentous and/or pleomorphic

(Filoviridae)

119

Virions pleomorphic, usually isometric; RNA 15-16kb

(Paramyxoviridae)

120

119.

Virions about 790  nm in length; genomes contain a single gene overlap

Filoviridae / “Marburg-like viruses”

Virions about 970  nm in length; genomes contain several gene overlaps

Filoviridae / “Ebola-like viruses”

120.

RNA contains 6-7 transcriptional elements

(Paramyxovirinae)

121

RNA contains 10 transcriptional elements

(Pneumovirinae)

123

121.

Virions contain a neuraminidase

122

Virions lack a neuraminidase

Paramyxoviridae / Paramyxovirinae / Morbillivirus

122.

RNA encodes a C protein

Paramyxoviridae / Paramyxovirinae / Respirovirus

RNA does not encode a C protein

Paramyxoviridae / Paramyxovirinae / Rubulavirus

123.

Genome contains NS1 and NS2 genes

Paramyxoviridae / Pneumovirinae / Pneumovirus

Genome lacks NS1 or NS2 genes

Paramyxoviridae / Pneumovirinae / Metapneumovirus

124.

RNA 11 to 15kb; virions bacilliform

(Rhabdoviridae)

125

RNA about 9  kb; virions rare, isometric

Bornaviridae / Bornavirus

125.

Hosts animals

126

Hosts plants

129

126.

RNA > 12  kb

Rhabdoviridae / Ephemerovirus

RNA < 12kb

127

127.

Genome contains an NV gene; hosts aquatic animals

Rhabdoviridae / Novirhabdovirus

Genome lacks an NV gene

128

128.

Genome 11.2  kb; virus arthropod-borne

Rhabdoviridae / Vesiculovirus

Genome 11.9  kb; virus not arthropod-borne

Rhabdoviridae / Lyssavirus

129.

Virions accumulate in the cytoplasm

Rhabdoviridae / Cytorhabdovirus

Virions accumulate in the perinuclear space

Rhabdoviridae / Nucleorhabdovirus

130.

RNA in > 5 segments

(Orthomyxoviridae)

131

RNA in < 5 segments

134

131.

Genome of 8 segments

132

Genome of 6 or 7 segments

133

132.

Virions react with genus-specific antibodies

Orthomyxoviridae / Influenzavirus A

Virions react with genus-specific antibodies

Orthomyxoviridae / Influenzavirus B

133.

Nucleoprotein 64K; hosts uniquely vertebrates

Orthomyxoviridae / Influenzavirus C

Nucleoprotein 54K; host are both ticks and vertebrates

Orthomyxoviridae / Thogotovirus

134.

Virions about 8  nm diameter filaments; hosts plants

135

Virions not filamentous

136

135.

Genome in 4 or 5 segments; hosts in Graminae

Tenuivirus

Genome of 3 segments; hosts not in Graminae

Ophiovirus

136.

Genomes comprise 2 RNA segments; virions contain host ribosomes

Arenaviridae / Arenavirus

Genomes comprise 3 RNA segments; virions do not contain ribosomes

(Bunyaviridae)

137

137.

Hosts plants

Bunyaviridae / Tospovirus

Hosts animals

138

138.

Largest genome RNA > 10  kb

Bunyaviridae / Nairovirus

Largest genome RNA < 10  kb

139

139.

Smallest genome RNA < 1.1  kb

Bunyaviridae / Bunyavirus

Smallest genome RNA > 1.1  kb

140

140.

N protein < 35K; S RNA is ambisense

Bunyaviridae / Phlebovirus

N protein > 35K

Bunyaviridae / Hantavirus

The Positive Sense RNA Viruses

141.

Hosts prokaryotic

(Leviviridae)

142

Hosts eukaryotic

143

142.

RNA < 4  kb; genome contains a separate lysis gene

Leviviridae / Levivirus

RNA > 4  kb; genome contains no separate lysis gene

Leviviridae / Allolevivirus

143.

No specific virions identified; RNA can be encapsidated in heterologous coat protein;

hosts plants

144

Virus-specific capsids formed in infected cells

146

144.

Hosts plants

Umbravirus

Hosts fungi

(Narnaviridae)

145

145.

Hosts Saccharomyces sp.; genome 2.5kb

Narnaviridae / Narnavirus

Hosts Cryphonectria sp.; genome 2.7kb

Narnaviridae / Mitovirus

146.

Virions possess an envelope

147

Virions lack an envelope

154

147.

Genome expressed as a polyprotein; no sub-genomic RNA are formed in infected cells

(Flaviviridae)

148

Sub-genomic RNA are formed in infected cells

150

148.

RNA > 12  kb; virions contain 4 structural proteins

Flaviviridae / Pestivirus

RNA < 12  kb; encode 2 structural E proteins

149

149.

RNA > 10  kb; hosts vertebrates and often also invertebrates

Flaviviridae / Flavivirus

RNA < 10  kb; man is the only host

Flaviviridae / Hepacivirus

150.

Infected cells contain 1 species of sub-genomic RNA

(Togaviridae)

151

Infected cells contain > 1 species of sub-genomic RNA arranged in a 3 co-terminal nested set

(order Nidovirales)

152

151.

Virions 70  nm in diameter; virus can multiply in insects

Togaviridae / Alphavirus

Virions 60  nm in diameter; hosts vertebrates

Togaviridae / Rubivirus

152.

RNA > 20  kb; virions pleomorphic

(Coronaviridae)

153

RNA < 20  kb; virions spherical

Arteriviridae / Arterivirus

153.

Virions spherical or pleomorphic with club-shaped surface projections

Coronaviridae / Coronavirus

Virions biconcave disk-shaped, kidney-shaped or rod-shaped with a peplomer-bearing envelope

Coronaviridae / Torovirus

154.

Coat protein expressed by proteolysis of a large (> 100K) polyprotein

155

Coat protein expressed by translation of a small genomic or a sub-genomic RNA

172

155.

Hosts animals

156

Hosts plants

162

156.

Hosts invertebrates

“Cricket paralysis-like viruses”

Hosts vertebrate animals; structural proteins the N-terminal sequence of the polyprotein or within 30K of the N-terminus

(Picornaviridae)

157

157.

Mature capsids contain 4 polypeptides; VP4 is myristylated

158

Mature capsids contain only 3 polypeptides; structural proteins not myristylated

Picornaviridae / Parechovirus

158.

Polyproteins contain a leader (L) protein

159

Polyproteins do not contain an L protein

160

159.

Buoyant density in CsCl < 1.35 g/cm3; L protein is not a protease

Picornaviridae / Cardiovirus

Buoyant density in CsCl > 1.35 g/cm3; L protein is a protease

Picornaviridae / Aphthovirus

160.

Protein 1A (VP4) < 2K

Picornaviridae / Hepatovirus

Protein 1A > 3K

161

161.

Virions stable at acid pH; buoyant density in CsCl < 1.35  g/cm3

Picornaviridae / Enterovirus

Virions not stable at acid pH; buoyant density in CsCl > 1.35 g/cm3

Picornaviridae / Rhinovirus

162.

Virions filamentous

163

Virions isometric

168

163.

Virions < 700  nm in length; RNA < 7kb; polymerase “alpha-like”

Capillovirus

Virions > 700  nm in length; RNA > 7kb; polymerase “picorna-like”

(Potyviridae)

164

164.

Genomes in 1 segment; vectors not fungi

165

Genomes in 2 segments; vectors fungi

Potyviridae / Bymovirus

165.

Vector an aphid

166

Vector a mite

167

Vector a whitefly

Potyviridae / Ipomovirus

166.

Virions > 720  nm in length; coat protein amino acid sequence < 30% identical to those of macluraviruses

Potyviridae / Potyvirus

Virions < 720  nm in length; coat protein amino acid sequence < 30% identical to those of potyviruses

Potyviridae / Macluravirus

167.

Hosts include wheat; vector Aceria tulipae

Potyviridae / Tritimovirus

Hosts do not include wheat; vector Abacarus hystrix

Potyviridae / Rymovirus

168.

Genomes of 1 segment

(Sequiviridae)

169

Genomes of 2 segments

(Comoviridae)

170

169.

Virus mechanically transmissible, not phloem-limited

Sequiviridae / Sequivirus

Virus phloem-limited, not mechanically transmissible

Sequiviridae / Waikavirus

170.

Larger RNA species > 7kb; virions usually contain 1 coat protein type of about 57K; virus usually transmitted by nematodes

Comoviridae / Nepovirus

Larger RNA species < 7kb; virions contain 2 coat proteins

171

171.

Vector a beetle

Comoviridae / Comovirus

Vector an aphid

Comoviridae / Fabavirus

172.

Hosts animals

173

Hosts plants or fungi

182

173.

Genome < 5kb

(Nodaviridae)

174

Genome > 5kb

175

174.

Hosts insects

Nodaviridae / Alphanodavirus

Hosts fish

Nodaviridae / Betanodavirus

175.

Largest or sole genome component < 6kb; hosts exclusively insects

(Tetraviridae)

176

Largest or sole genome component > 6kb; hosts include vertebrates

177

176.

Genomes of 1 segment

Tetraviridae / Betatetravirus

Genomes of 2 segments

Tetraviridae / Omegatetravirus

177.

Virions contain one coat protein with Mr of 59K to 71K and have cup-shaped depressions

178

Virions contain 2 or 3 coat proteins with Mr of 29K to 39K and some virions appear star-shaped

Astroviridae / Astrovirus

178.

Non-structural proteins “picorna-like“; RNA has a VPg

(Caliciviridae)

179

Non-structural proteins “alpha-like““; RNA lacks a VPg, probably capped

“Hepatitis E-like viruses“

179.

Major structural protein expressed from a separate ORF

180

Major structural protein expressed as part of a polyprotein

181

180.

ORFs 1 and 2 separated by few nucleotides; virus readily cultured

Caliciviridae / Vesivivirus

ORF 2 overlaps ORF 1 by about 14  nts; virus not readily cultured

Caliciviridae / “Norwalk-like viruses“

181.

Genome has 2 major ORFs; hosts rabbits

Caliciviridae / Lagovirus

Genome has 3 major ORFs; hosts humans

Caliciviridae / “Sapporo-like viruses”

182.

Vector transmission circulative

183

No vector known or transmission non-circulative

186

183.

Vector a leafhopper

Marafivirus

Vector an aphid

(Luteoviridae)

184

184.

Two ORFs are expressed by translation of genomic RNA; virion RNA not capped and lacks a VPg

Luteoviridae / Luteovirus

Three ORFs are expressed from genomic RNA; virion RNA has a VPg

185

185.

Coat protein ORF includes an out-of-frame ORF; infectivity not dependent on co-infection with an umbravirus

Luteoviridae / Polerovirus

Coat protein ORF does not contain other ORFs; infectivity is dependent on co-infection by an umbravirus

Luteoviridae / Enamovirus

186.

Virions isometric or bacilliform

187

Virions with helical symmetry

204

187.

Hosts fungi; particles bacilliform

Barnaviridae / Barnavirus

Hosts not fungi

188

188.

RNA about 6kb; coat protein approximately 20K; vector a beetle

Tymovirus

RNA < 5.5kb; coat protein > 20K

189

189.

Coat protein encoded by the largest or the sole genome RNA

190

Genome multi-partite; coat protein encoded by approximately 2kb mRNA

198

190.

Genomic RNA is capped

(Tombusviridae)

191

Genomic RNA is not capped but is attached to a VPg

Sobemovirus

191.

Genomes bipartite

Tombusviridae / Dianthovirus

Genomes monopartite

192

192.

Coat protein > 35K

193

Coat protein < 35K

196

193.

Coat protein gene is the 3-most ORF

194

Coat protein is followed downstream by a non-structural protein ORF

195

194.

Coat protein > 45K

Tombusviridae / Avenavirus

Coat protein < 45K

Tombusviridae / Carmovirus

195.

RNA > 4.6  kb infected cells contain multi-vesicular bodies

Tombusviridae / Tombusvirus

RNA < 4.6  kb infected cells contain single membrane-bounded vesicular bodies

Tombusviridae / Aureusvirus

196.

RNA < 4  kb

197

RNA > 4  kb vector an insect

Tombusviridae / Machlomovirus

197.

Genome expression monocistronic; vector Olpidium sp.

Tombusviridae / Necrovirus

Genome expression multicistronic; no vector known

Tombusviridae / Panicovirus

198.

Genomes tripartite

199

Genomes bipartite

Idaeovirus

199.

Virions isometric or bacilliform, not stable in CsCl solutions

(Bromoviridae)

200

Virions have conical ends, stable in CsCl solutions

Ourmiavirus

200.

Virions isometric and sediment as 1 component

201

Virions not isometric and sediment as > 1 component

203

201.

Virions do not contain the coat protein mRNA; coat protein c. 24K; virus not transmitted by aphids

Bromoviridae / Oleavirus

Virions contain 4 sizes of RNA including the coat protein mRNA

202

202.

Coat protein c. 20K; virus not aphid-transmitted

Bromoviridae / Bromovirus

Coat protein > 24K; virus aphid-transmitted

Bromoviridae / Cucumovirus

203.

Some virions bacilliform; virus aphid-transmitted

Bromoviridae / Alfamovirus

Virions slightly pleomorphic; virus not aphid-transmitted

Bromoviridae / Ilarvirus

204.

Virions rod-shaped

205

Virions flexible filaments

211

205.

Genomes in 1 segment

Tobamovirus

Genomes in > 1 segment

206

206.

Virions > 20  nm in diameter; virus transmitted by nematodes

Tobravirus

Virions < 20  nm in diameter

207

207.

Some virions > 250  nm; largest RNA > 5  kb; virus fungus-transmitted

208

Virions < 200  nm; largest RNA < 5  kb; virus not transmitted by fungi

Hordeivirus

208.

Genomes do not encode a triple gene block; genome bipartite

Furovirus

Genomes encode a triple gene block

209

209.

Genomes tripartite;

Pomovirus

Genomes bipartite;

210

210.

Virons encapsidate more than 2 size classes of RNA; an ORF is expressed by suppression of the coat protein termination codon

Benyvirus

Virions encapsidate 2 RNA types; coat protein termination codon is not suppressed

Pecluvirus

211.

Genomes > 10kb in 1 or 2 pieces; virions > 700  nm in length

(Closteroviridae)

212

Genomes < 10kb; virions < 800  nm in length

213

212.

Genomes monopartite

Closteroviridae / Closterovirus

Genomes bipartite

Closteroviridae / Crinivirus

213.

Genome encodes a triple gene block of proteins

214

Genome does not encode a triple gene block

217

214.

Virions < 700  nm in length

215

Virions > 700  nm in length

216

215.

Genomes contain 5 ORFs; coat protein Mr < 27000

Potexvirus

Genomes contain 6 ORFs; coat protein Mr > 27000

Carlavirus

216.

Genomes contain 6 ORFs; virus transmitted by mites

Allexivirus

Genomes contain 5 ORFs; no vector known

Foveavirus

217.

Genomes contain 5 ORFs; virus transmitted by insects

Vitivirus

Genomes contain < 5 ORFs; no vector known

Trichovirus


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